iCluster and TCGA

iCluster workflow

I performed iCluster on various disease cohorts sequenced by the TCGA.

Relevant publications:

  1. Akbani, R., Akdemir, K.C., Aksoy, B.A., Albert, M., Ally, A., Amin, S.B., Arachchi, H., Arora, A., Auman, J.T., Ayala, B. and Baboud, J., 2015. Genomic classification of cutaneous melanoma. Cell, 161(7), pp.1681-1696.

  2. Abeshouse, A., Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C.D., Annala, M., Aprikian, A., Armenia, J., Arora, A. and Auman, J.T., 2015. The molecular taxonomy of primary prostate cancer. Cell, 163(4), pp.1011-1025.

  3. Wheeler, D.A., Roberts, L.R. and Cancer Genome Atlas Research Network, 2017. Comprehensive and integrative genomic characterization of hepatocellular carcinoma. Cell, 169(7), p.1327.

  4. Farshidfar, F., Zheng, S., Gingras, M.C., Newton, Y., Shih, J., Robertson, A.G., Hinoue, T., Hoadley, K.A., Gibb, E.A., Roszik, J. and Covington, K.R., 2017. Integrative genomic analysis of cholangiocarcinoma identifies distinct IDH-mutant molecular profiles. Cell reports, 18(11), pp.2780-2794.

Arshi Arora
Arshi Arora
Research Biostatistician

New Yorker from Jaipur, India. Cancer Genomics, pottery and biking.